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Part I. Synthesis and Application of α-Per(inter)halocarbonyl Compounds Part II. Development of Simple Predictive Models for Organic Reactions with Small Dataset and Minimal Features

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Abstract
Part I. Synthesis and Application of α-Per(inter)halocarbonyl Compounds:
Geminal chlorofluorides are versatile synthetic precursors to various organofluorines with a tetrasubstituted carbon center. In this work, we reported the geminal chlorofluorination of 1,2-dicarbonyl compounds via the tandem deoxygenative electrophilic and nucleophilic halogenations. The rationally designed dealkylation-resistant phosphoramidite enabled the use of non-proton electrophiles and heteroatom-bearing 1,2-dicarbonyl compounds. As a result, α-keto esters (O), α-keto thioesters (S), α-keto N-acylindoles (N), and α-keto acylsilane (Si) were successfully transformed to doubly or triply hetero-functionalized tetrasubstituted carbon centers with excellent site-selectivity.
Subsequently, upon derivatization of geminal chlorofluorides with azide, we discovered the remarkable accelerating effect of the geminal fluorine substituent that enables the facile rearrangement of geminal azidofluorides into imidoyl fluorides without the typically required aid of strong acid under mild reaction conditions. The role of geminal fluorine was elucidated by both experimental and computational investigations. This new reactivity led to a practical one-step tandem preparative method for rarely known bench-stable imidoyl fluorides from a wide range of structurally diverse geminal chlorofluorides.
To expand beyond 1,2-dicarbonyl substrates, the electronically similar, synthetically and pharmaceutically valuable α-perfluoroketones were evaluated. However, the inherent challenges associated with the activation and discrimination of the C–F bonds typically lead to over-defluorination as well as functional group incompatibility. We addressed these problems by utilizing our group’s rationally designed organophosphorus reagent that promoted mild and selective manipulation of single C–F bond in trifluoromethyl and pentafluoroethyl ketones via an interrupted Perkow-type reaction, which allowed the replacement of fluorine with more labile and synthetically versatile congeners such as chlorine, bromine, and iodine. The resulting α-halo-perfluoro ketones have two reactive units with orthogonal properties that would be suitable for the subsequent structural diversification. DFT calculation identified the favorable P–F interaction as the crucial factor for both thermodynamic and kinetic viewpoints.
Part II. Development of Simple Predictive Models for Organic Reactions with Small Dataset and Minimal Features:
Machine learning (ML) is an emerging area in organic synthesis for the reaction design and prediction. In recent studies, the ML approach for reaction development using big data with many features provided the best reaction conditions for the optimal yields and stereoselectivities. Despite the high performance, the preparation of large datasets is often difficult, especially for non-specialists. In this study, simple ML models were developed by utilizing easily available and familiar 13C NMR chemical shifts of the reacting sites in the substrates for our geminal chlorofluorination. Upon training on small datasets (<150) with condensed features, the feed-forward neural network (FNN) model could predict the yields and site-selectivities with reasonable efficiency. Moreover, we observed a notaable improvement in performance upon removal of empirically less relevant features. Subsequently, our ML model was advanced through the utilization of an unusual tabular augmentation method for stereoselective geminal bromofluoroolefination by fitting the real datasets into sigmoid or logarithmic curves. With the augmented dataset, the prediction of reaction profiles with the FNN model was substantially improved. The linearly combined use of our augmentation technique and conditional tabular generative adversarial network (CTGAN) also enhanced the model even further.
Author(s)
김하은
Issued Date
2025
Type
Thesis
URI
https://scholar.gist.ac.kr/handle/local/19564
Alternative Author(s)
Ha Eun Kim
Department
대학원 화학과
Advisor
Chung, Won-jin
Table Of Contents
Abstract i
List of Contents iii
List of Schemes viii
List of Figures xii
List of Equations xv
List of Tables xvi
Synthesis and Application of α-Per(inter)halocarbonyl Compounds
I. Introduction 2
1.1. Geminal Chlorofluorination of Various 1,2-Dicarbonyl Compounds 2
1.1.1. Our Previous Works 2
1.1.2. Access to Multifunctionalized Tetrasubstituted Carbon Centers 8
1.1.3. Our Purpose for Geminal Chlorofluorination of 1,2-Dicarbonyl Compounds 9
1.2. Azidation and Fluorine-assisted Rearrangement of Geminal Chlorofluorides 12
1.2.1. Synthetic Utility and Preparative Method of Imidoyl Fluorides 12
1.2.2. Our Purpose for Azidation and Fluorine-assisted Rearrangement 13
1.3. Mono-defluorinative Functionalization of Perfluoroalkyl Ketones 14
1.3.1. Defluorinative Functionalization of α-Perfluoroalkyl Ketones 14
1.3.2. Our Purpose for Mono-defluorinative Functionalization of Perfluoroalkyl Ketones 16
II. Results and Discussion 18
2.1. Synthesis of Geminal Chlorofluorides via Kukhtin-Ramirez Reaction 18
2.1.1. Preparation of Various 1,2-Dicarbonyl Compounds 18
2.1.2. Initial Optimization with α-Keto Thioester 21
2.1.3. Optimization with Dealkylation-resistant Phosphorus Reagents 22
2.1.4. Reaction Scope – α-Keto Thioesters, Amides, and Acylsilanes 26
2.1.5. Reaction Scope – α-Keto Esters 34
2.1.6. Computational Study 35
2.1.7. Asymmetric Geminal Chlorofluorination 36
2.2. Azidation and Fluorine-assisted Rearrangement of Geminal Chlorofluorides 40
2.2.1. Preparation of Geminal Azidofluorides and a Defluoro Analogue 40
2.2.2. Quantitative Analysis and Mechanistic Studies 41
2.2.3. Reaction Condition Optimization 45
2.2.4. Reaction Scope – Aryl Migration 46
2.2.5. Reaction Scope – Alkyl and Benzoyl Migration 47
2.2.6. Scope Expansion 50
2.2.7. Synthetic Applications 51
2.3. Mono-defluorinative Functionalization of Perfluoroalkyl Ketones 54
2.3.1. Preparation of Perfluoroalkyl Ketones 54
2.3.2. Optimization of Defluorination 60
2.3.3. Optimization of Halogenations 68
2.3.4. Reaction Scope of Defluorinative Halogenations 70
2.3.5. Defluorinative Protonation 75
2.3.6. Other Functionalizations 79
2.3.7. Asymmetric Defluorinative Functionalizations 82
2.3.8. Computational Study 88
III. Conclusion 90
·
Development of Simple Predictive Models for Organic Reactions with Small Dataset and Minimal Features
IV. Introduction 93
4.1. Machine Learning with Small Dataset and Minimal Features 93
4.2. Our Purpose for Development of Simple Predictive Models for Organic Reactions 94
V. Results and Discussion 97
5.1. Prediction of Yield and Site-selectivity for Geminal Chlorofluorination 97
5.1.1. Model with All Descriptors 97
5.1.2. Model with Reduced Descriptors 98
5.1.3. Model with Simplified Substrates 100
5.2. Prediction of Reaction Profile for Geminal Bromofluoroolefination 102
5.2.1. Model with Real Data 102
5.2.2. Model with Augmented Data 104
5.2.3. Fitting with Kinetic Equations 109
VI. Conclusion 111
VII. Miscellaneous 112
7.1. Preparation of α-Phosphoniumoxy Enoxy Complex 112
7.2. Preparation of Oxazaphospholene 112
7.3. Preparation of Dioxaphospholene from Benzoin with Phosphorus(V) Reagent 116
7.4. Asymmetric Reduction of Benzil 117
7.5. Palladium-Catalyzed Coupling Reaction with Dioxaphospholene 117
7.6. 6π-Electrocyclization and Desymmetrization of Dioxaphospholene 118
7.7. Copper-catalyzed Cross-coupling of Geminal Chlorofluoride 120
7.8. Reductive Functionalization of Trifluoromethyl Ketones 120
7.9. Attempted Skeletal Editing of Phthalazine and Indole 127
7.10. Relayed Heteroatom Group Transfer of Bisthioester 130
VIII. Acknowledgements 131
IX. References 132
X. Experimental 144
10.1. General Experimental 144
10.2. Experimental Procedures 147
10.2.1. Geminal Chlorofluorination of 1,2-Diketones 147
10.2.1.1. Prepraration of 1,2-Diketones 147
10.2.1.2. Geminal Chlorofluorination of Aryl–Aryl Substrates 148
10.2.1.3. Geminal Chlorofluorination of Aryl–Alkyl Substrates 150
10.2.1.4. Preparation of α-Keto Amides 152
10.2.2. Geminal Chlorofluorination and Derivatization of α-Keto Thioester 153
10.2.2.1. Preparation of Phosphorus Reagents 153
10.2.2.2. Formation of Dioxaphospholene 159
10.2.2.3. Geminal Chlorofluorination 162
10.2.2.4. Derivatization of Geminal Chlorofluorides 163
10.2.3. Geminal Chlorofluorination of α-Keto Acylsilane 166
10.2.3.1. Preparation of Alkynyl Silanes 166
10.2.3.2. General Procedure A for Preparation of α-Keto Acylsilanes 168
10.2.3.3. General Procedure B for Preparation of α-Keto Acylsilanes 170
10.2.3.4. Formation of Dioxaphospholene 171
10.2.3.5. Geminal Chlorofluorination 173
10.2.4. Geminal Chlorofluorination and Derivatization of α-Keto Acylindoles 174
10.2.4.1. Preparation of α-Keto Acylindoles 174
10.2.4.2. Formation of Dioxaphospholene 176
10.2.4.3. Geminal Chlorofluorination 177
10.2.4.4. Derivatization of Geminal Chlorofluorides 177
10.2.5. Asymmetric Geminal Chlorofluorination 178
10.2.6. Azidation and Fluorine-assisted Rearrangement of Geminal Chlorofluorides 181
10.2.6.1. Preparation of Geminal Azidofluorides 181
10.2.6.2. Azidation and Rearrangement of Geminal Chlorofluorides 184
10.2.6.3. Derivatization of Imidoyl Fluorides 185
10.2.7. Mono-defluorinative Functionalization of Perfluoroalkyl Ketones 186
10.2.7.1. Preparation of Substrates from Aldehydes 186
10.2.7.2. Preparation of Substrates from Acids 188
10.2.7.3. Preparation of Substrates via Acylation and N–H Protection 196
10.2.7.4. Preparation of Substrates from Perfluoroalkyl Esters 198
10.2.7.5. Attempted Substrate Preparations 199
10.2.7.6. Defluorination 202
10.2.7.7. Defluorinative Halogenation 209
10.2.7.8. Defluorinative Protonation and Deuteration 227
10.2.7.9. Defluorinative Alkylation 234
10.2.7.10. Preparation of Chiral Catalysts 236
10.3. Miscellaneous 242
10.3.1. Preparation of Monoximes 242
10.3.2. 6π-Electrocyclization and Desymmetrization of Dioxaphospholene 243
10.3.3. Reductive Functionalization of Trifluoromethyl Ketones 246
10.3.4. Skeletal Editing of Phthalazine and Indole 250
10.4. DFT Calculations 251
10.5. Preparation of Datasets and Models 256
10.5.1. Predictive Models for Geminal Chlorofluorination 256
10.5.2. Predictive Models for Geminal Bromofluoroolefination 256
10.6. Experimental References 268
Curriculum Vitae 272
Appendix: NMR Spectra 275
Degree
Doctor
Appears in Collections:
Department of Chemistry > 4. Theses(Ph.D)
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