OAK

Development of Simplified Assay for the Detection of Agmatine to Assess Arginine Decarboxylase Activity

Metadata Downloads
Abstract
Arginine deprivation therapy represents a promising strategy for targeting arginine-auxotrophic cancers, exploiting the metabolic vulnerability of tumor cells deficient in argininosuccinate synthetase (ASS1) and argininosuccinate lyase (ASL). Among arginine-depleting enzymes, arginine decarboxylase (RDC) offers a unique advantage due to its pH-dependent activation in acidic tumor microenvironments. However, the relatively low enzymatic activity of RDC compared to other arginine-depleting enzymes limits its therapeutic potential. Directed evolution has shown promise in enhancing enzyme activity, but its application to RDC has been constrained by the lack of a robust, high-throughput screening (HTS) assay tailored to measure RDC activity. This study addresses this limitation by developing an innovative enzymatic cascade assay that uses diamine oxidase (DAO) and horseradish peroxidase (HRP) in a cascade reaction with TMB as the substrate. This system allows for rapid, sensitive, and high-throughput quantification of RDC activity. The assay was successfully validated with RDC wild-type (RDC-WT) and mutant (RDC-T39W) forms, demonstrating its ability to detect activity differences in both purified enzymes and cell lysates. By eliminating separation steps and streamlining the workflow, this mix-and-measure assay significantly simplifies RDC activity screening and paves the way for directed evolution to optimize RDC functionality. The establishment of this HTS-compatible assay marks a critical step toward enhancing RDC's therapeutic potential as a tumor-targeted arginine depletion enzyme. These findings contribute to the broader development of innovative enzymatic therapies for cancer treatment.
Author(s)
김수연
Issued Date
2025
Type
Thesis
URI
https://scholar.gist.ac.kr/handle/local/19167
Alternative Author(s)
Suyeon Kim
Department
대학원 신소재공학부
Advisor
Kwon, Inchan
Table Of Contents
Abstract
Contents
List of Figures
I. Introduction
II. Materials and Methods
2.1. Materials
2.2. Preparation of RDC variants
2.3. Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis (SDS-PAGE) Analysis
2.4. Matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass analysis
2.5. RDC variants enzymatic activity measurement through butanol separation assay
2.6. H2O2 calibration of DAO-HRP enzymatic cascade assay
2.7. Agmatine calibration of DAO-HRP enzymatic cascade assay
2.8. Comparative evaluation of RDC activity measurement methods
2.9. RDC variants enzymatic activity measurement through DAO-HRP enzymatic cascade assay
2.10. RDC variants enzymatic activity measurement through DAO-HRP enzymatic cascade assay in crude lysate
III. Results and Discussion
3.1. Preparation of RDC variants
3.2. H2O2 quantification by HRP
3.3. Agmatine quantification by DAO-HRP
3.4. RDC reaction product quantification using DAO-HRP enzymatic assay
3.5. Enzymatic activity comparison of RDC mutants using DAO-HRP assay
3.6. Activity comparison of RDC mutants in crude lysates using DAO-HRP assay
IV. Conclusions
Summary
Reference
Acknowledgement
Degree
Master
Appears in Collections:
Department of Materials Science and Engineering > 3. Theses(Master)
공개 및 라이선스
  • 공개 구분공개
파일 목록
  • 관련 파일이 존재하지 않습니다.

Items in Repository are protected by copyright, with all rights reserved, unless otherwise indicated.