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Advancing Multi-Photon Microscopy for Deep Tissue Imaging Through Monte Carlo Simulation Insights

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Abstract
This computational study explores advancements in multi-photon microscopy for deep tissue imaging, with a primary focus on optimizing laser input parameters to enhance imaging depth, signal quality, and thermal management through Monte Carlo simulations. We utilized an already published multi- layer Monte Carlo model and validated, providing critical insights into light transport, fluorescence generation, and heat dissipation within biological tissues. The research emphasizes the superior performance of three-photon excitation microscopy compared to two-photon techniques in deeper imaging contexts, demonstrating enhanced signal-to-background ratios, minimized photodamage, and improved imaging fidelity. Comprehensive simulations were conducted to generate heat maps for various wavelengths and surface power levels across different depths, offering a detailed analysis of thermal dynamics for both two- and three-photon microscopy. Furthermore, AI-driven approaches for real-time optimization of imaging parameters are proposed, laying the foundation for the next generation of intelligent microscopy systems capable of delivering high-resolution, non-invasive imaging across complex biological structures. Sharif Hamza ALL RIGHTS RESERVED MS/MD 20201170
Author(s)
Sharif Hamza
Issued Date
2025
Type
Thesis
URI
https://scholar.gist.ac.kr/handle/local/18843
Alternative Author(s)
Sharif Hamza
Department
대학원 의생명공학과
Advisor
Kwon, Hyuk-Sang
Table Of Contents
Abstract I
Table of Contents II
List of Tables IV
List of Figures V
Chapter 1 Introduction 1
1.1 Theory of Multiphoton Interaction 1
1.2 Multiphoton Microscopy 2
1.3 Instrumentation 4
1.4 Simulating Light 6
1.5 Existing Multiphoton Simulation Work 7
Chapter 2 Monte Carlo Simulation of Light Transport 8
2.1 Simulating Photons Transport 9
2.2 Boundary Condition in Multi-Layer Monte Carlo Model 10
2.3 Basic MC simulation decision tree 11
2.4 Simulation of fluence 13
2.5 Limitations of Photon Monte Carlo Simulation 15
2.6 Publicly available Monte Carlo Simulation Codes 17
Chapter 3 Heat Generation in Tissue Under Laser Irradiation 19
3.1 Optical Properties of Tissues 20
3.2 Thermal Effects in Single-Photon (Confocal) Microscopy 20
3.3 Thermal Effects in Two-Photon Microscopy 20
3.4 Thermal Effects in Three-Photon Microscopy 20
3.5 Potential Tissue Damage Mechanisms 21
– iii –
Chapter 4 Results and Discussion 23
4.1 Signal Distribution Across Depths 23
4.2 Temperature Profiles 24
4.3 Automation of Optimized Hybrid model using AI for Multiphoton Microscopy 27
4.4 Conceptual Framework of the AI Hybrid Model. 27
4.5 Components of the AI Hybrid Model 28
Summary 33
References 34
Acknowledgements 39
– iv –
Degree
Master
Appears in Collections:
Department of Biomedical Science and Engineering > 3. Theses(Master)
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